Publications FY2009

  • Tomoaki Hamano, Toshio Endo, and Satoshi Matsuoka.  Power-Aware Dynamic Task Scheduling for Heterogeneous Accelerated Clusters. In Proceedings of the Fifth Workshop on High-Performance, Power-Aware Computing (HPPAC), in conjunction to IEEE IPDPS 2009, Rome, May 2009.
  • Ali Cevahir, Akira Nukada, and Satoshi Matsuoka. Fast Conjugate Gradients with Multiple GPUs. In Proceedings of International Conference on Computer Science (ICCS 2009), Lecture Notes in Computer Science, Vol. 5544, pp.893-903, Springer, May 2009.
  • Satoshi Matsuoka   Takayuki Aoki   Toshio Endo   Akira Nukada   Toshihiro Kato,    Atsushi Hasegawa, GPU accelerated computing--from hype to mainstream, the rebirth of vector computing, Journal of Physics: Conference Series, Scientific Discovery through Advanced Computing (SciDAC 2009), Vol. 180, No. 1, pp. 012043, San Diego, CA, July 2009.
  • Akira Nukada, Satoshi Matsuoka, Auto-Tuning 3-D FFT Library for CUDA GPUs, In Proceedings of the 2009 ACM/IEEE conference on Supercomputing (SC09), Portland, OR, November 2009.
  • Satoshi Matsuoka. TSUBAME 1.2 and the Road to TSUBAME 2.0 - Accelerated
    Multi-Petascale Commodity Computing for Everyone. Keynote Talk, Asia South HPC Conference, Singapore, Apr. 28th, 2009.
  • Satoshi Matsuoka. GPU Accelerated Computing---From Hype to Mainstream, the Rebirth of Vector Computing, Invited Talk, Scientific Discovery through Advanced Computing Program (SciDAC), San Diego, CA, June 15th, 2009.
  • Toshio Endo. Supercomputing on The TSUBAME GPU-Accelerated Cluster, CSIRO GPU Cluster Workshop, Melbourne, June 2009.
  • Satoshi Matsuoka. TSUBAME 1.2 and the Road to TSUBAME 2.0 - Accelerated
    Multi-Petascale Commodity Computing for Everyone. Invited Seminar Talk, Vijre University, Amsterdam, the Netherlands, June 26th, 2009.
  • Satoshi Matsuoka. Petascaling Commodity onto Exascale: GPUs as Multithreaded Massively-Parallel Vector Processors - the Only Road to Exascale. Keynote Talk, IEEE Cluster Computing Conference 2009, New Orleans, USA, Sep.3, 2009.
  • Satoshi Matsuoka. Clusters, Clouds, and Commerce, Invited Panelist, IEEE Cluster Computing Conference 2009, New Orleans, USA, Sep.3, 2009.
  • Satoshi Matsuoka. The Future of Computing and Japan, Invited Panelist, 21st Century Computing Conference, Hiyoshi, Japan, Nov. 4, 2009
  • Satoshi Matsuoka. Petascaling Commodity onto Exascale with GPUs on TSUBAME1.2 onto TSUBAME2.0, Invited Presentation, ACM/IEEE Supercomputing (SC09) NVidia Booth, Portland, OR, Nov. 17, 2009.
  • Satoshi Matsuoka. Petascaling Commodity onto Exascale with GPUs and Windows HPC. Invited Presentation, ACM/IEEE Supercomputing (SC09) Microsoft Booth, Portland, OR, Nov. 17, 2009.
  • Satoshi Matsuoka. “Accelerated Computing in TSUBAME 1.2/2.0”, Invited Talk, Accelerated Computing Symposium, Tokyo, Japan, Jan. 28, 2009.
  • Satoshi Matsuoka. “GPU Acceleration: a Fad or the Yellow Brick Road onto Exascale?”, 2010 SIAM Conference on Parallel Processing and Scientific Computing, Invited Talk, Seattle, WA, Feb. 24-26, 2009.
  • Naoya Maruyama   Akira Nukada   Satoshi Matsuoka. Software-Based ECC for GPUs. In 2009 Symposium on Application Accelerators in High Performance Computing (SAAHPC'09), Urbana-Champaign, IL, July 2009.
  • Naoya Maruyama, Akira Nukada, and Satoshi Matsuoka, A High-Performance Fault-Tolerant Software Framework for Memory on Commodity GPUs, NVIDIA GPU Technology Conference 2009, poster, San Jose, CA, September 2009.
  • Da Qi Ren and Reiji Suda, "Measurement, Modeling and Evaluation for the Power Consumption of Large Matrices Multiplication on Multi-core Computers", International Journal of Computational Science. Volume 3, Number 4, pp. 387-401, 2009.
  • Da Qi Ren and Reiji Suda, “Load Scheduling for Power Aware Matrix Multiplication on CPU-GPU Multiprocessing Platform”, Proceedings of the 17th Conference on the Computation of Electromagnetic Fields (COMPUMAG 2007), pp.1080-1081. Florianopolis, Brazil, Nov 22-26, 2009.
  • Da Qi Ren and Reiji Suda, "Power Model of Large-Scale Matrix Multiplication on Multi-core CPUs and GPUs Platform", The 8th International Conference on Parallel Processing and Applied Mathematics (PPAM 2009). Wroclaw, Poland, Sep 13-16, 2009.
  • Da Qi Ren and Reiji Suda, "Power Efficient Large Matrices Multiplication by Load Scheduling on Multi-core and GPU platform with CUDA", Proceeding of 12th IEEE International Conference on Computational Science and Engineering (CSE 2009) , pp. 424-429, 6 pages in CD, Vancouver Canada, Aug 29-31, 2009.
  • Da Qi Ren, Reiji Suda, "Modeling and Estimation for the Power Consumption of Matrix Computations on Multi-core CPU and GPU platform", Proceedings of IEEE International Workshop on HPC and Grid Applications (IWHGA 2009), pages 42-46, Sanya, China, Apr 24-26, 2009.
  • Kamil Rocki, Reiji Suda, "Parallel minimax tree searching on GPU", 8 pages, The 8th International Conference on Parallel Processing and Applied Mathematics (PPAM 2009), Wroclaw, Poland, Sep. 13-16, 2009.
  • Reiji Suda and Da Qi Ren, "Accurate Measurements and Precise Modeling of Power Dissipation of CUDA Kernels toward Power Optimized High Performance CPU-GPU Computing ", The Tenth International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT), Hiroshima, Japan, Dec 8-11, 2009.
  • Takahiro Katagiri (the University of Tokyo), "Auto-tuned Sparse Iterative Solver Toward Petascale Era", Third French-Japanese Workshop -- Petascale Applications, Algorithms, and Programming (PAAP) --, Shiran-Kaikan Hall Annex, Kyoto University, April 21-22, 2009.
  • Takahiro Katagiri, "Xabclib: A Sparse Iterative Solver with a Generalized Auto-tuning Interface, and Overview of Auto-tuning Studies in Japan", Center for Scalable Appication Development Sofware (CScADS) Summer Workshops, Workshop on Librarries and Autotuning for Petascale Applications, Granlibakken Resort and Conference Center, Tahoe City, CA, USA, August 10-12, 2009.
  • Takahiro Katagiri, "Model for Software Automatic Tuning", Fourth international Workshop on Automatic Tuning (iWAPT 2009), poster, p. 74, 2009.
  • Takayuki Aoki: GPU Computing for Large-Scale CFD, International RIAM Symposium on Analyses of Strongly Nonlinear Fluid-Structure Interactions, Fukuoka, Dec 11, 2009
  • Takayuki Aoki: CFD Applications - From Single GPU to Multiple GPUs, SIGGRAPH Asia 2009, GPU Computing Master Class, Yokohama, December 16, 2009
  • Naoyuki Onodera, Takayuki Aoki, Hiromichi Kobayashi: Large Eddy Simulation of Turbulent Channel Flow with Conservative IDO Scheme, 15th International Conference on Finite Elements in Flow Problems, FEF09, CD-ROM, Tokyo April 1-3, 2009.
  • Marlon Arce Acuna, Takayuki Aoki, Satoi Ogawa: GPU driven acceleration for solving the Shallow Water Equation, 15th International Conference on Finite Elements in Flow Problems, FEF09, CD-ROM, Tokyo April 1-3, 2009.
  • Kenta Sugihara, Takayuki Aoki: GPU Computing of a compressible flow by using IDO-CF scheme, 15th International Conference on Finite Elements in Flow Problems, FEF09, CD-ROM, Tokyo April 1-3, 2009.
  • Jose Miguel Montanana, Michihiro Koibuchi, Takafumi Watanabe,Tomoyuki Hiroyasu, Hiroki Matsutani, Hideharu Amano, ``An On/Off Link Activation Method for Power Regulation in InfiniBand'', Proc. of the 2009 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'09), pp. 289-295, Jun 2009
  • Yuri Nishikawa, Michihiro Koibuchi, Masato Yoshimi, Akihiro Shitara,  Kenichi Miura,  Hideharu Amano, ``Performance Analysis of ClearSpeed's CSX600 Interconnects'', IEEE International Symposium on Parallel and Distributed Processing with Applications(ISPA), pp.203-210, Aug 2009
  • Jose Miguel Montanana, Michihiro Koibuchi, Hiroki Matsutani, Hideharu Amano, ``Balanced Dimension-Order Routing for k-ary n-cubes'', Proc. Of the 4th International Symposium on Embedded Multicore Systems-on-Chip (MCSoC'09), Sep 2009 (CD-ROM)
  • Michihiro Koibuchi, Tomohiro Otsuka, Hiroki Matsutani, Hideharu Amano, "An On/Off Link Activation Method for Low-Power Ethernet in PC Clusters", Proc. of the 23rd IEEE International Parallel and Distributed Processing Symposium (IPDPS'09), CD-ROM, May 2009
  • Michihiro Koibuchi, Tomohiro Otsuka, Tomohiro Kudoh, Hideharu Amano, ``A Switch-tagged Routing Methodology for PC Clusters with VLAN Ethernet'', IEEE Transactions on Parallel and Distributed Systems (to appear)
  • Zhenxia Zhu , Sachiko Aida-Hyugaji, "Theoretical Analysis of Binding Affinity of Human Mannose-Binding Protein Carbohydate Recognition Domain to Mannose", BioInfo2009 CBI-KSBSB Joint Conference, poster, Busan, Nov. 2009
  • Chiduru Watanabe, Sachiko Aida-Hyugaji, Kaori Fukuzawa, "Intramolecular Interaction of Human Estrogen Receptor Ligand Binding Domain with Different Helix12 Positions Studied by Ab initio Fragment Molecular Orbital Method", BioInfo2009 CBI-KSBSB Joint Conference, poster, Busan, Nov. 2009.
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